Turn OFF the microwave When you turn OFF the microwave, there will be an alarm from Microwave VI regarding the microwave temperatures. That's because you turned it OFF. So you can ignore that alarm and Turn off that alarm using the "Warning Sound" toggle button on the microwave VI (see the image below).
Check with the Target Expert whether you want to take data for T1 measurement. If yes, then Set the GV-Bypass PID to 23.48 Torr (to maintain 2K to take T1 measurement) If not, then Set the GV-Bypass PID to 400 Torr (press the "Auto Control with Pressure" button and ensure the setpoint is 400 Torr)